Prediction, in silico antioxidant activity, and targeted synthesis of sterically hindered phenol azomethine derivatives
https://doi.org/10.19163/2307-9266-2026-14-2-175-188
Abstract
Molecular design and synthesis of a new series of biologically active azomethines containing a sterically hindered phenolic fragment were carried out. Within the scope of the study, 8 compounds were synthesized, and their antioxidant activity was evaluated under in vitro conditions. To establish the mechanism of action, molecular docking was used to model the interaction of the synthesized ligands with the active site of glutathione peroxidase-4 (GPx-4). The conducted analysis revealed key structural features determining antioxidant efficacy and established a correlation between molecular structure and biological activity.
The aim. Synthesis, computer screening, and investigation of the antioxidant properties of new azomethines based on sterically hindered phenol, as well as establishing structure–activity relationships.
Materials and methods. A new series of 2,6-di-tert-butyl-4-[C-alkyl-(aryl)-(N-phenyl)-azomethine]phenols was synthesized by the condensation of corresponding ketones with aromatic amines in the presence of catalytic amounts of p-toluenesulfonic acid. The structure and purity of the obtained compounds were confirmed by a complex of physicochemical methods, including IR spectroscopy, H NMR spectroscopy, and elemental analysis. For the initial assessment of the biological potency of the synthesized compounds, computer prediction (in silico) of their antioxidant, antiradical, and cardiotonic properties was performed using the online platform PASS Online. Molecular modeling of potential inhibitory activity against human glutathione peroxidase-4 (GPx-4) was carried out using the Autodock 4.0 program. The conformational mobility of the ligands was taken into account, for which optimal torsion angles were previously determined and set. Experimental study of antioxidant activity (AOA) was conducted in two model systems: induction of lipid peroxidation (LPO) in a complex of corn oil fatty acids under UV irradiation; and the Fenton system (H₂O₂/Fe²⁺). To compare efficacy, ubiquinone and bottled hydroxytoluene (BHT, the active substance of the drug dibulin), representing the class of sterically hindered phenols, were used as reference standards.
Results. The spectrum of biological activity of the studied compounds was predicted in silico using the PASS Online service. As it was expected, all substances have cardiotonic, membrane-stimulating, and antioxidant potential. The presence of AOA and the ability to scavenge free radicals allows these molecules to be classified as antiradical agents. Experimental verification of AOA was carried out in two model systems: based on photooxidation (UV irradiation) of a complex of fatty acids from corn oil (system No. 1) and on the Fenton system (H₂O₂/Fe²⁺, system No. 2). In all the cases, the studied compounds demonstrated high efficacy, inhibiting lipid peroxidation LPO by 42–48%. This result significantly exceeds the activity of standard antioxidants — ubiquinone (11%) and BHT (39%) — in the same conditions.
Conclusion. The results of molecular docking indicate a high affinity of the new ligands to the GP-4 protein, with the calculated binding energy for the most promising structures being comparable to that of known standards—ubiquinone, dibulin (hydroxybutylated toluene), and mexidol. In vitro experimental data confirmed the pronounced antioxidant activity of the synthesized compounds. “Lead” structures were identified that surpass classical antioxidants—ubiquinone and dibulin — in efficacy.
Keywords
About the Authors
T. V. TsakulovaRussian Federation
senior lecturer of the Department of Pharmacy, North Ossetian State Medical Academy; applicant of the Department of Pharmaceutical Chemistry, Pyatigorsk Medical and Pharmaceutical Institute – branch of Volgograd State Medical University.
1. 40 Pushkinskaya Str., Vladikavkaz, Russia, 362019.
2. 11 Kalinin Аve., Pyatigorsk, Russia, 357532.
I. P. Kodonidi
Russian Federation
Doctor of Sciences (Pharmacy), Professor, Head of the Department of Pharmaceutical Chemistry, Pyatigorsk Medical and Pharmaceutical Institute – branch of Volgograd State Medical University.
11 Kalinin Аve., Pyatigorsk, Russia, 357532.
A. S. Chiriapkin
Russian Federation
Candidate of Sciences (Pharmacy), Senior Lecturer of the Department of Pharmaceutical Chemistry, Pyatigorsk Medical and Pharmaceutical Institute – branch of Volgograd State Medical University.
11 Kalinin Аve., Pyatigorsk, Russia, 357532.
F. N. Bidarova
Russian Federation
Candidate of Sciences (Pharmacy), Assistant Professor, Head of the Department of Pharmacy, North Ossetian State Medical Academy.
40 Pushkinskaya Str., Vladikavkaz, Russia, 362019.
M. T. Kisieva
Russian Federation
Candidate of Sciences (Pharmacy), Assistant Professor, Head of the Department of Pharmacy, North Ossetian State Medical Academy.
40 Pushkinskaya Str., Vladikavkaz, Russia, 362019.
L. A. Usmanova
Russian Federation
4th-year student of the Faculty of Pharmacy, North Ossetian State Medical Academy.
40 Pushkinskaya Str., Vladikavkaz, Russia, 362019.
References
1. Aboonabi A, Singh I. The effectiveness of antioxidant therapy in aspirin resistance, diabetes population for prevention of thrombosis. Biomed Pharmacother. 2016;83:277–282. doi: 10.1016/j.biopha.2016.06.044
2. Spasov AA, Kucheryavenko AF, Kosolapov VA, Anisimova VA. Antithrombogenic activity of antioxidant compounds. Bulletin of Experimental Biology and Medicine. 2013;155(6):775–777. EDN: QMVXGL
3. Kudriashova MV, Dovgaliuk IuV, Mishina LE, Berezin MV, Grineva MR, Pakhrova OA, Mazanko OE. [Possibilities of correction of rheological properties of the blood and free radical processess in patients with acute myocardial infarction combined with type 2 diabetes mellitus]. Kardiologiia. 2010;50(5):9–12. Russian
4. Desai N, Shah KN, Monapara J, Dave BP, Ahmad I, Patel H. Design, synthesis, biological profile and molecular modeling and MD simulation studies of heterocyclic benzimidazole and thiazolidine-4-one based 5-arylidene analogues as prospective antimicrobial agents. Journal of Molecular Structure. 2024;1299:137166. DOI:10.1016/j.molstruc.2023.137166
5. Mohsen А, Tawfik SS, Bhongade BA, Massoud MAM, Mostafa AS. Design, synthesis, and in silico insights into dual-inhibition of CDK-6 / Aurora A kinase by 2-phenylbenzimidazole-based small molecules. Journal of Molecular Structure. 2023;1300(10229):137215. DOI:10.1016/j.molstruc.2023.137215
6. Hayat Sh, Ullah H, Rahim F, Ullah I, Taha M, Iqbal N, Khan F, Khan MS, Ali Shah SA, Wadood A, Sajid M, Abdalla AN. Synthesis, biological evaluation and molecular docking study of benzimidazole derivatives as α-glucosidase inhibitors and anti-diabetes candidates. Journal of Molecular Structure. 2023;1276:134774. DOI:10.33394/hjkk.v13i5.17725
7. Mushtaq I, Ahmad M, Saleem M, Ahmed A. Pharmaceutical significance of Schiff bases: an overview. Futur J Pharm Sci. 2024;10(16):7215–7221. DOI:10.18433/J30G62
8. Kareem HS, Ariffin A, Nordin N, Heidelberg T, Abdul-Aziz A, Kong KW, Yehye WA. Correlation of antioxidant activities with theoretical studies for new hydrazone compounds bearing a 3,4,5-trimethoxy benzyl moiety. Eur J Med Chem. 2015;103:497–505. DOI: 10.1016/j.ejmech.2015.09.016
9. Yang L, Liu H, Xia D, Wang S. Antioxidant Properties of Camphene-Based Thiosemicarbazones: Experimental and Theoretical Evaluation. Molecules. 2020;25(5):1192. DOI: 10.3390/molecules25051192
10. Shatokhin SS, Tuskaev VA, Gagieva SCh, Markova AA, Pozdnyakov DI, Melnikova EK, Bulychev BM, Oganesyan ET. Synthesis, cytotoxic and antioxidant activities of new n-substituted 3-(benzimidazol-2-yl)-chromones containing 2,6-di-tert-butylphenol fragment. Journal of Molecular Structure. 2022;1249:131683. DOI: 10.1016/j.molstruc.2021.131683
11. Shahab S, Sheikhi M, Filippovich L, Dikusar E, Pazniak A, Rouhani M, Kumar R. Molecular Investigations of the Newly Synthesized Azomethines as Antioxidants: Theoretical and Experimental Studies. Curr Mol Med. 2019;19(6):419–433. DOI: 10.2174/1566524019666190509102620
12. Plotnikov MB, Smolyakova VI, Ivanov IS, Kuchin AV, Chukicheva IJ, Krasnov EA. Antithrombogenic and antiplatelet activity of optho-isobornyl phenol derivative. Bull Exp Biol Med. 2008;145(3):328–330. DOI: 10.1007/s10517-008-0082-x
13. Poroikov VV, Filimonov DA, Gloriozova TA, Lagunin AA, Druzhilovskiy DS, Rudik AV, Stolbov LA, Dmitriev AV, Tarasova OA, Ivanov SM, Pogodin PV. Computer-aided prediction of biological activity spectra for organic compounds: the possibilities and limitations. Russian Chemical Bulletin. 2019;68(12):2143–2154. DOI:10.18097/BMCRM00004
14. Berman HM, Burley SK. Protein Data Bank (PDB): Fifty-three years young and having a transformative impact on science and society. Q Rev Biophys. 2025;58:e9. DOI: 10.1017/S0033583525000034
15. Morris GM, Huey R, Lindstrom W, Sanner MF, Belew RK, Goodsell DS, Olson AJ. AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility. J Comput Chem. 2009;30(16):2785–2791. DOI: 10.1002/jcc.21256
16. Ravi L, Krishnan K. Handbook on protein-ligand Docking tool: AutoDock4. Journal of Medical Science. 2016;4:28–33. DOI: 10.22037/jmlis.v1i1.31726
17. Teppen BJ. Hyperchem, release 2: molecular modeling for the personal computer. Journal of Chemical Information and Computer Sciences. 1992;32:757–759. DOI: 10.1021/ci00010a025
18. Moosmayer D, Hilpmann A, Hoffmann J, Schnirch L, Zimmermann K, Badock V, Furst L, Eaton JK, Viswanathan VS, Schreiber SL, Gradl S, Hillig RC. Crystal structures of the selenoprotein glutathione peroxidase 4 in its apo form and in complex with the covalently bound inhibitor ML162. Acta Crystallogr D Struct Biol. 2021;77(Pt 2):237–248. DOI: 10.1107/S2059798320016125
19. Monova T, Konstantinov O, Kalenderova S, Tsakovski S, Kossekova G. Design and implementation of virtual models in medical biochemistry learning. Journal AIP Conference Proceedings. – 2018. – Vol. 2048. – P. 20033. DOI: 10.1063/1.5082051
20. Procko K, Bakheet S, Beckham JT, Franzen MA, Jakubowski H, Novak WRP. Modeling an Enzyme Active Site using Molecular Visualization Freeware. J Vis Exp. 2021;(178). DOI: 10.3791/63170
21. Khubaeva TO, Khubaeva IV. Studies of antimicrobial activity in the field of benzimidazole derivatives with a fragment of spatially obstructed phenol // Current innovative research: science and practice. – 2013;(4):7. EDN: RSTTBF. Russian
22. Wang X, Ni L, Yang L, Duan Q, Chen C, Edin ML, Zeldin DC, Wang DW. CYP2J2-derived epoxyeicosatrienoic acids suppress endoplasmic reticulum stress in heart failure. Mol Pharmacol. 2014;85(1):105–115. DOI: 10.1124/mol.113.087122
23. Grigoriev SM, Skarga YY, Mironova GD, Marinov BS. Regulation of mitochondrial KATP channel by redox agents. Biochim Biophys Acta. 1999;1410(1):91–96. DOI: 10.1016/s0005-2728(98)00179-0
24. Wang H, Wang C, Li B, Zheng C, Liu G, Liu Z, Zhang L, Xu P. Discovery of ML210-Based glutathione peroxidase 4 (GPX4) degrader inducing ferroptosis of human cancer cells. Eur J Med Chem. 2023;254:115343. DOI: 10.1016/j.ejmech.2023.115343
25. Voronina TA, Litvinova SA, Gladysheva NA, Shulyndin AV. The known and new ideas about the mechanism of action and the spectrum of effects of Mexidol. S.S. Korsakov Journal of Neurology and Psychiatry. 2025;125(5):22–33. DOI: 10.17116/jnevro202512505122
26. Shatokhin SS, Tuskaev VA, Gagieva SC., Markova AA, Pozdnyakov DI, Denisov GL, Melnikova EK, Bulychev BM, Oganesyana ET. Synthesis, cytotoxicity and antioxidant activity of new 1,3-dimethyl-8-(chromon-3-yl)-xanthine derivatives containing 2,6-di-tert-butylphenol fragments. New Journal of Chemistry. 2022;46(2):621–631. DOI: 10.1039/D1NJ03726A
27. Pozdnyakov DI, Hadzhieva ZJ, Pozdnyakova AE. Administration of 4-Hydroxy-3,5-di-tert-butyl cinnamic acid restores mitochondrial function in rabbits with cerebral ischemia. Serbian Journal of Experimental and Clinical Research. 2021;23(2):121–125. DOI: 10.2478/sjecr-2019-0075
28. Pozdnyakov DI, Zatsepina EE, Arlt AV. Effect of compounds containing 4-hydroxy-3,5-di-tert-butylphenyl group on changes in mitochondrial enzyme activity and tau-protein content in rat hippocampus studied on experimental model of Alzheimer’s disease. Éksperimentalnaya i Klinicheskaya Farmakologiya. 2022;85(6):9–13. DOI:10.30906/0869-2092-2022-85-6-9-13. Russian
Review
For citations:
Tsakulova T.V., Kodonidi I.P., Chiriapkin A.S., Bidarova F.N., Kisieva M.T., Usmanova L.A. Prediction, in silico antioxidant activity, and targeted synthesis of sterically hindered phenol azomethine derivatives. Pharmacy & Pharmacology. 2026;14(2):175-188. https://doi.org/10.19163/2307-9266-2026-14-2-175-188
JATS XML



















































